{"doi":"10.1007/s00705-013-1726-3","title":"Genome sequence analysis of the Vibrio parahaemolyticus lytic bacteriophage VPMS1","abstract":null,"journal":"Archives of Virology","year":2013,"id":600556,"datarank":0.37273599746820013,"base_score":2.4849066497880004,"endowment":2.4849066497880004,"self_citation_contribution":0.37273599746820013,"citation_network_contribution":0.0,"self_endowment_contribution":0.37273599746820013,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":11,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":null,"is_data_producer":false,"deposit_databanks":null,"is_oa":false,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":null,"fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1539710,"name":"Vania Serrano-Pinto","orcid":null,"position":1,"is_corresponding":false},{"id":1539711,"name":"Norma Ochoa-Álvarez","orcid":null,"position":2,"is_corresponding":false},{"id":1064899,"name":"Roman Makarov","orcid":"0000-0002-4174-3826","position":3,"is_corresponding":false},{"id":1539712,"name":"Sergio F. Martínez-Díaz","orcid":null,"position":4,"is_corresponding":false},{"id":1539709,"name":"Martín Ramírez-Orozco","orcid":null,"position":0,"is_corresponding":false}],"reference_count":0,"raw_metadata":{"has_enrichment":true,"resolved":true,"title":"Genome sequence analysis of the Vibrio parahaemolyticus lytic bacteriophage VPMS1","abstract":"VPMS1 is a Vibrio parahaemolyticus lytic phage isolated from a marine clam. The 42.3-kb genome was predicted to encode 53 proteins. Comparison of the VPMS1 DNA genome with known phage genomes revealed no similarity; hence, it represents a new VP phage, organized into three differently oriented modules. The module for packaging covers 12 % of the genome, the module for structure covers 31 %, and the module for replication and regulation covers 48 %. The G + C content was 44.67 %. The coding region corresponds to 91 % of the genome, and 9 % apparently does not encode any protein. Thirty genes, constituting 57 % of the genome, had significant similarity to some reported proteins in the protein database; 23 genes, constituting 43 % of the genome, showed no significant homology to any reported protein, and these could be new proteins whose hypothetical functions can be deduced from their position in the genome.","is_dataset_classified":null,"base_score":2.4849066497880004,"endowment":2.4849066497880004,"datacite_reuse_total":0,"file_count":0,"downloads":0,"views":0,"has_version_chain":false,"is_dataset":false,"is_oa":false,"pmid":"23732928","pmcid":null,"openalex_id":"https://openalex.org/W2135598780","authors":[],"funders":[],"total_grants":0,"fwci":0.8806,"citation_percentile":0.76736076,"influential_citations":0,"citation_trend":[{"year":2015,"count":1},{"year":2016,"count":2},{"year":2018,"count":1},{"year":2019,"count":1},{"year":2020,"count":1},{"year":2021,"count":1},{"year":2022,"count":1},{"year":2024,"count":1},{"year":2025,"count":1},{"year":2026,"count":1}],"oa_status":"closed","license":"http://www.springer.com/tdm","oa_locations":[{"url":"http://link.springer.com/content/pdf/10.1007/s00705-013-1726-3.pdf","host_type":"publisher"},{"url":"http://link.springer.com/article/10.1007/s00705-013-1726-3/fulltext.html","host_type":"publisher"},{"url":"http://link.springer.com/content/pdf/10.1007/s00705-013-1726-3","host_type":"publisher"},{"url":"https://doi.org/10.1007/s00705-013-1726-3","host_type":"journal"},{"url":"https://pubmed.ncbi.nlm.nih.gov/23732928","host_type":"repository"}],"fields_of_study":["Bacteriophages and microbial interactions","Vibrio bacteria research studies","Genomics and Phylogenetic Studies","Animals","Bacteriophages","Base Composition","Bivalvia","Genome, Viral","Lysogeny","Molecular Sequence Data","Sequence Analysis, DNA","Vibrio parahaemolyticus","Viral Proteins"],"mesh_terms":["Animals","Bacteriophages","Base Composition","Lysogeny","Molecular Sequence Data","Vibrio parahaemolyticus","Viral Proteins","Genome, Viral","Sequence Analysis, DNA","Bivalvia"],"keywords":["Genome","Lytic cycle","Biology","Vibrio parahaemolyticus","ENCODE","Bacteriophage","Gene","Genome project","Genetics","Genome size","Lysogenic cycle","Homology (biology)","GC-content","Genome evolution","Whole genome sequencing","Computational biology","Virus","Bacteria","Escherichia coli"],"sdg_mappings":[{"sdg_number":0,"sdg_label":"Zero hunger"}],"linked_datasets":[],"clinical_trials":[],"software_tools":[],"database_accessions":[],"source":"live","citation_network_status":"fetched"},"created_at":"2026-07-29T13:27:49.289208Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}