{"doi":"10.1002/jcc.20290","title":"The Amber biomolecular simulation programs","abstract":"We describe the development, current features, and some directions for future development of the Amber package of computer programs. This package evolved from a program that was constructed in the late 1970s to do Assisted Model Building with Energy Refinement, and now contains a group of programs embodying a number of powerful tools of modern computational chemistry, focused on molecular dynamics and free energy calculations of proteins, nucleic acids, and carbohydrates.","journal":"Journal of Computational Chemistry","year":2005,"id":3935,"datarank":14.126086627827616,"base_score":9.161675199994901,"endowment":9.161675199994901,"self_citation_contribution":1.3742512799992355,"citation_network_contribution":12.751835347828381,"self_endowment_contribution":1.3742512799992355,"citer_contribution":12.751835347828381,"corpus_percentile":92.5,"corpus_rank":1009,"citation_count":9524,"citer_count":167,"citers_with_citation_signal":167,"citers_with_endowment":167,"datacite_reuse_total":0,"is_dataset":false,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2005-09-30","authors":[{"id":7203,"name":"Thomas E. Cheatham","orcid":"0000-0003-0298-3904","position":1,"is_corresponding":false},{"id":13011,"name":"Tom Darden","orcid":null,"position":2,"is_corresponding":false},{"id":39809,"name":"Holger Gohlke","orcid":"0000-0001-8613-1447","position":3,"is_corresponding":false},{"id":39810,"name":"Ray Luo","orcid":"0000-0002-6346-8271","position":4,"is_corresponding":false},{"id":12675,"name":"Kenneth M. Merz","orcid":"0000-0001-9139-5893","position":5,"is_corresponding":false},{"id":39811,"name":"Alexey Onufriev","orcid":null,"position":6,"is_corresponding":false},{"id":39812,"name":"Carlos Simmerling","orcid":"0000-0002-7252-4730","position":7,"is_corresponding":false},{"id":39813,"name":"Bing Wang","orcid":"0000-0003-3662-7625","position":8,"is_corresponding":false},{"id":39814,"name":"Robert J. Woods","orcid":"0000-0002-2400-6293","position":9,"is_corresponding":false},{"id":39815,"name":"Alexey V. Onufriev","orcid":"0000-0002-4930-6612","position":10,"is_corresponding":false},{"id":39808,"name":"David A. Case","orcid":"0000-0003-2314-2346","position":0,"is_corresponding":true}],"reference_count":145,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}