{"doi":"10.1002/cpz1.1120","title":"Setting Up the JBrowse 2 Genome Browser","abstract":"JBrowse 2 is a modular genome browser that can visualize many common genomic file formats. While JBrowse 2 supports a variety of different usages, it is particularly suited for deployment on websites, such as model organism databases or other web-based genomic data resources. This protocol provides detailed instructions for setting up JBrowse 2 on an Ubuntu Linux web server, loading a reference genome from a FASTA format file, and adding a gene annotation track from a GFF3 format file. By the end of the protocol, users will have a working JBrowse 2 instance that is accessible via the web. © 2024 The Author(s). Current Protocols published by Wiley Periodicals LLC. Basic Protocol: Setting up JBrowse 2 on your web server.","journal":"Current Protocols","year":2024,"id":479003,"datarank":0.16479184330021646,"base_score":1.0986122886681096,"endowment":1.0986122886681096,"self_citation_contribution":0.16479184330021646,"citation_network_contribution":0.0,"self_endowment_contribution":0.16479184330021646,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":2,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9605,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2024-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":19093,"name":"Robert Buels","orcid":"0000-0002-9605-5895","position":1,"is_corresponding":false},{"id":706666,"name":"Garrett Stevens","orcid":"0000-0002-9781-5323","position":2,"is_corresponding":false},{"id":983350,"name":"Caroline Bridge","orcid":"0000-0002-7913-8832","position":3,"is_corresponding":false},{"id":49665,"name":"Scott Cain","orcid":"0000-0003-0459-9607","position":4,"is_corresponding":false},{"id":14310,"name":"Lincoln Stein","orcid":"0000-0002-1983-4588","position":5,"is_corresponding":false},{"id":382987,"name":"Ian Holmes","orcid":"0000-0001-7639-5369","position":6,"is_corresponding":false},{"id":584246,"name":"Colin Diesh","orcid":"0000-0003-2629-7570","position":0,"is_corresponding":true}],"reference_count":6,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-07-19T02:06:50.355747Z","pmid":"39126338","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}