{"doi":"10.1002/cpz1.1014","title":"Data‐Independent Acquisition and Label‐Free Quantification for Quantitative Proteomics Analysis of Human Cerebrospinal Fluid","abstract":"This article presents a practical guide to mass spectrometry-based data-independent acquisition and label-free quantification for proteomics analysis applied to cerebrospinal fluid, offering a robust and scalable approach to probing the proteomic composition of the central nervous system. © 2024 Wiley Periodicals LLC. Basic Protocol 1: Cerebrospinal fluid sample collection and preparation for mass spectrometry analysis Basic Protocol 2: Mass spectrometry sample analysis with data-independent acquisition Support Protocol: Data-dependent mass spectrometry and spectral library construction Basic Protocol 3: Analysis of mass spectrometry data.","journal":"Current Protocols","year":2024,"id":478566,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":2,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.8859,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2024-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1317654,"name":"Alexander W. Rookyard","orcid":null,"position":1,"is_corresponding":false},{"id":1317366,"name":"Lipi Das","orcid":"0000-0003-4428-7747","position":2,"is_corresponding":false},{"id":63303,"name":"Badri N. Vardarajan","orcid":"0000-0002-5560-4085","position":3,"is_corresponding":false},{"id":973299,"name":"Jayanta K. Chakrabarty","orcid":null,"position":4,"is_corresponding":false},{"id":1221165,"name":"Anu Jain","orcid":null,"position":5,"is_corresponding":false},{"id":1037219,"name":"Min Suk Kang","orcid":"0000-0002-8334-2262","position":6,"is_corresponding":false},{"id":321191,"name":"Emily G. Werth","orcid":"0000-0001-8953-0611","position":7,"is_corresponding":false},{"id":413237,"name":"Dolly Reyes‐Dumeyer","orcid":"0000-0003-3572-8248","position":8,"is_corresponding":false},{"id":1317655,"name":"Marielba Zerlin‐Esteves","orcid":null,"position":9,"is_corresponding":false},{"id":108602,"name":"Lawrence S. Honig","orcid":"0000-0002-9703-2265","position":10,"is_corresponding":false},{"id":27608,"name":"Richard Mayeux","orcid":"0000-0001-6519-9696","position":11,"is_corresponding":false},{"id":321192,"name":"Lewis M. Brown","orcid":"0000-0002-1864-3077","position":12,"is_corresponding":false},{"id":1317365,"name":"Karl A.T. Makepeace","orcid":"0000-0001-9584-2750","position":0,"is_corresponding":true}],"reference_count":28,"raw_metadata":null,"created_at":"2026-07-19T02:06:46.330532Z","pmid":"38506436","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}