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The current version of the ontology integrates diverse vocabularies used to describe <jats:italic>Arabidopsis</jats:italic>, maize and rice (<jats:italic>Oryza</jats:italic> sp.) anatomy, morphology and growth stages. Using the ontology browser, over 3500 gene annotations from three species‐specific databases, The Arabidopsis Information Resource (TAIR) for <jats:italic>Arabidopsis</jats:italic>, Gramene for rice and MaizeGDB for maize, can now be queried and retrieved. 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